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authorJuan Gomez Luna <juan.gomez@safari.ethz.ch>2021-06-16 19:46:05 +0200
committerJuan Gomez Luna <juan.gomez@safari.ethz.ch>2021-06-16 19:46:05 +0200
commit3de4b495fb176eba9a0eb517a4ce05903cb67acb (patch)
treefc6776a94549d2d4039898f183dbbeb2ce013ba9 /NW/baselines/gpu/README
parentef5c3688c486b80a56d3c1cded25f2b2387f2668 (diff)
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+Needleman-Wunsch (NW)
+
+Compilation instructions
+
+ make
+
+Execution instructions
+
+ ./needle 46080 10
+
+
+Note: This program generate two sequences randomly. Please specify your own sequences for different uses.
+ At the current stage, the program only supports two sequences with the same lengh, which can be divided by 16.
+Usage: needle 32 10
+ 32 //the length of both sequences
+ 10 //penalty value
+
+******Adjustable work group size*****
+RD_WG_SIZE_0 or RD_WG_SIZE_0_0
+
+USAGE:
+make clean
+make KERNEL_DIM="-DRD_WG_SIZE_0=16"