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Needleman-Wunsch (NW)
Compilation instructions
make
Execution instructions
./needle 46080 10
Note: This program generate two sequences randomly. Please specify your own sequences for different uses.
At the current stage, the program only supports two sequences with the same lengh, which can be divided by 16.
Usage: needle 32 10
32 //the length of both sequences
10 //penalty value
******Adjustable work group size*****
RD_WG_SIZE_0 or RD_WG_SIZE_0_0
USAGE:
make clean
make KERNEL_DIM="-DRD_WG_SIZE_0=16"
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